Useful scars: Physics of the capsids of archaeal viruses.
نویسندگان
چکیده
We propose a physical model for the capsids of tailed archaeal viruses as viscoelastic membranes under tension. The fluidity is generated by thermal motion of scarlike structures that are an intrinsic feature of the ground state of large particle arrays covering surfaces with nonzero Gauss curvature. The tension is generated by a combination of the osmotic pressure of the enclosed genome and an extension force generated by filamentous structure formation that drives the formation of the tails. In continuum theory, the capsid has the shape of a surface of constant mean curvature: an unduloid. Particle arrays covering unduloids are shown to exhibit pronounced subdiffusive and diffusive single-particle transport at temperatures that are well below the melting temperature of defect-free particle arrays on a surface with zero Gauss curvature.
منابع مشابه
Virus Structure: From Crick and Watson to a New Conjecture
We conjecture that certain patterns (scars), theoretically and numerically predicted to be formed by electrons arranged on a sphere to minimize the repulsive Coulomb potential (the Thomson problem) and experimentally found in spherical crystals formed by self-assembled polystyrene beads (an instance of the generalized Thomson problem), could be relevant to extend the classic Caspar and Klug con...
متن کاملIdentified Hybrid tRNA Structure Genes in Archaeal Genome
Background: In Archaea, previous studies have revealed the presence of multiple intron-containing tRNAs and split tRNAs. The full unexpurgated analysis of archaeal tRNA genes remains a challenging task in the field of bioinformatics, because of the presence of various types of hidden tRNA genes in archaea. Here, we suggested a computational method that searched for widely separ...
متن کاملOn (Schr\"oedinger's) quest for new physics for life
Two recent investigations are reviewed: quantum effects for DNA aggregates and scars formation on virus capsids. The possibility that scars could explain certain data recently obtained by Sundquist’s group in electron cryotomography of immature HIV-1 virions is also briefly addressed. Furthermore, a bottom-up reflection is presented on the need to invent new physics to pave the way to a rigorou...
متن کاملMechanical properties of viral capsids.
Viruses are known to tolerate wide ranges of pH and salt conditions and to withstand internal pressures as high as 100 atmospheres . In this paper we investigate the mechanical properties of viral capsids, calling explicit attention to the inhomogeneity of the shells that is inherent to their discrete and polyhedral nature. We calculate the distribution of stress in these capsids and analyze th...
متن کاملStatistical Analysis of Instantaneous Effect of Polarized He-Ne Laser Radiation on the Elastic Modulus of Soft Biological Tissue
Introduction: This work is dedicated to investigating the effect of applying polarized He-Ne laser beam (λ= 632 nm, 10 mW, 1 j/cm2) with polarization direction perpendicular to the stress direction on the tensile strength of biological tissue (elasticity index of the Pleura 10*4*0.1 mm). Method and Material: The optimized characteristics of the laser illumi...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Physical review. E
دوره 94 1-1 شماره
صفحات -
تاریخ انتشار 2016